Overview

Insignia is a project to create and store information about a broad range of microbial pathogens, focusing primarily on bacteria and viruses. There are two major components to the system:

  • Insignia: A computational pipeline to generate unique DNA signatures for any and all pathogens in our database
  • Gemina: An integrated database containing genome sequences, phenotypic information, and comparative genomic analysis of all pathogens

For citation, more information, or validation results for Vibrio cholerae, please see our publication:


- Organisms in Insignia -

There are 3809 organisms in Insignia (3266 viruses/phages ,543 non-viruses)

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List of organisms currently in database:

 A
Abelson murine leukemia virusAbutilon mosaic virusAcanthamoeba polyphaga mimivirus
Acheta domestica densovirusAcholeplasma phage L2Acholeplasma phage MV-L1 JA-1
Acidianus filamentous virus 1Acidianus two-tailed virusAcidobacteria bacterium Ellin345 Ellin345
Acinetobacter phage AP205Acinetobacter sp. ADP1 ADP1Aconitum latent virus
Actinoplanes phage phiAsp2Acute bee paralysis virusAcyrthosiphon pisum bacteriophage APSE-1
Acyrthosiphon pisum virusAdeno-associated virus - 1Adeno-associated virus - 2
Adeno-associated virus - 3Adeno-associated virus - 3 3HAdeno-associated virus - 4
Adeno-associated virus - 5Adeno-associated virus - 7Adeno-associated virus - 8
Adeno-associated virus 3BAdeno-associated virus 6Adeno-associated virus-Go.1
Adoxophyes honmai NPV ADN001Adoxophyes orana granulovirusAdult diarrheal rotavirus strain J19 J19
Aedes albopictus densovirusAedes pseudoscutellaris reovirusAedes taeniorhynchus iridescent virus
Aeromonas phage 31Aeromonas phage 44RR2.8tAeromonas phage Aeh1 (Aeh1)
Aeromonas salmonicida bacteriophage 25African cassava mosaic virusAfrican green monkey polyomavirus
African horsesickness virusAfrican horsesickness virus serotype 6African horsesickness virus serotype 9
African swine fever virusAfrican swine fever virus BA71VAgeratum enation virus
Ageratum leaf curl disease associated sequenceAgeratum leaf curl virus - [G52]Ageratum yellow vein China virus
Ageratum yellow vein China virus-associated DNA betaAgeratum yellow vein Sri Lanka virusAgeratum yellow vein Taiwan virus
Ageratum yellow vein virusAgeratum yellow vein virus satellite DNA betaAgeratum yellow vein virus-associated DNA 1
Agrobacterium tumefaciens str. C58 C58Agropyron mosaic virus ND402Agrotis segetum granulovirus
Agrotis segetum nucleopolyhedrovirusAichi virusAlcelaphine herpesvirus 1 (wildebeest herpesvirus) C500
Aleutian mink disease virusAleutian mink disease virus ADV-GAlfalfa mosaic virus
Alfalfa mosaic virus 425 LeidenAlfuy virus MRM3929Alkhurma hemorrhagic fever virus 1176
Alstroemeria virus xAlternanthera mosaic virus (AltMV)Alternanthera yellow vein virus
Amasya cherry disease-associated mycovirusAmbystoma tigrinum stebbensi virus (ATV)Ambystoma tigrinum virus Ambystoma tigrinum stebbensi virus
American plum line pattern virusAmphotropic murine leukemia virus 1313Anabaena variabilis ATCC 29413 (Anabaena flos-aquae UTEX 1444) ATCC 29413
Anaeromyxobacter dehalogenans 2CP-C 2CP-CAnaplasma marginale str. St. Maries St. MariesAnaplasma phagocytophilum HZ HZ
Andes virus Chile-9717869Angelonia flower break virusAntheraea pernyi nucleopolyhedrovirus (ApNPV) zhenjiang
Aphid lethal paralysis virusApoi virus ApMARApple chlorotic leaf spot virus
Apple chlorotic leaf spot virus P863Apple dimple fruit viroidApple fruit crinkle viroid
Apple latent spherical virusApple mosaic virusApple scar skin viroid
Apple stem grooving virusApple stem pitting virus ASPVApricot pseudo-chlorotic leaf spot virus
Aquareovirus AAquareovirus C Golden shiner reovirusAquifex aeolicus VF5 VF5
Arabis mosaic virusArabis mosaic virus large satellite RNAArabis mosaic virus small satellite RNA
Archaeoglobus fulgidus DSM 4304Arctic ground squirrel hepatitis B virusArtichoke mottled crinkle virus
Aster yellows witches'-broom phytoplasma AYWBAteline herpesvirus 3 73Atkinsonella hypoxylon virus 2H
Atlantic salmon swim bladder sarcoma virusAura virusAustralian bat lyssavirus
Australian grapevine viroid (AGVd)Autographa californica nucleopolyhedrovirusAvian adeno-associated virus ATCC VR-865 ATCC VR-865
Avian adeno-associated virus ATCC VR-865 VR 865Avian adeno-associated virus strain DA-1 DA-1Avian carcinoma virus
Avian encephalomyelitis virusAvian encephalomyelitis virus CalnekAvian encephalomyelitis virus van Reokel
Avian endogenous retrovirus EAV-HPAvian hepatitis E virusAvian infectious bronchitis virus partridge/GD/S14/2003 Partridge/GD/S14/2003
Avian leukosis virus - RSAAvian leukosis virus Endogenous avian leukosis virus 1; ev-1Avian leukosis virus Endogenous avian leukosis virus 3; ev-3
Avian leukosis virus NX0101Avian metapneumovirusAvian metapneumovirus Colorado
Avian myelocytomatosis virusAvian paramyxovirus 6 (APMV-6)Avian paramyxovirus 6 (APMV-6) APMV-6/duck/Taiwan/Y1/98
Avirulent turkey hemorrhagic enteritis virusAvocado sunblotch viroidAzoarcus sp. EbN1 EbN1


11788, >, Abelson murine leukemia virus,
10815, >, Abutilon mosaic virus,
212035, >, Acanthamoeba polyphaga mimivirus,
185639, >, Acheta domestica densovirus,
46014, >, Acholeplasma phage L2,
10876, >, Acholeplasma phage MV-L1 JA-1,
235266, >, Acidianus filamentous virus 1,
315953, >, Acidianus two-tailed virus,
204669, >, Acidobacteria bacterium Ellin345 Ellin345,
154784, >, Acinetobacter phage AP205,
62977, >, Acinetobacter sp. ADP1 ADP1,
101764, >, Aconitum latent virus,
279303, >, Actinoplanes phage phiAsp2,
92444, >, Acute bee paralysis virus,
67571, >, Acyrthosiphon pisum bacteriophage APSE-1,
340187, >, Acyrthosiphon pisum virus,
85106, >, Adeno-associated virus - 1,
10804, >, Adeno-associated virus - 2,
46350, >, Adeno-associated virus - 3,
46350, >, Adeno-associated virus - 3 3H,
57579, >, Adeno-associated virus - 4,
82300, >, Adeno-associated virus - 5,
202812, >, Adeno-associated virus - 7,
202813, >, Adeno-associated virus - 8,
68742, >, Adeno-associated virus 3B,
68558, >, Adeno-associated virus 6,
296148, >, Adeno-associated virus-Go.1,
224399, >, Adoxophyes honmai NPV ADN001,
170617, >, Adoxophyes orana granulovirus,
335103, >, Adult diarrheal rotavirus strain J19 J19,
35338, >, Aedes albopictus densovirus,
341721, >, Aedes pseudoscutellaris reovirus,
386586, >, Aedes taeniorhynchus iridescent virus,
321023, >, Aeromonas phage 31,
115987, >, Aeromonas phage 44RR2.8t,
227470, >, Aeromonas phage Aeh1 (Aeh1),
386809, >, Aeromonas salmonicida bacteriophage 25,
10817, >, African cassava mosaic virus,
12480, >, African green monkey polyomavirus,
40050, >, African horsesickness virus,
40050, >, African horsesickness virus serotype 6,
40050, >, African horsesickness virus serotype 9,
10497, >, African swine fever virus,
10497, >, African swine fever virus BA71V,
188333, >, Ageratum enation virus,
169687, >, Ageratum leaf curl disease associated sequence,
298650, >, Ageratum leaf curl virus - [G52],
202567, >, Ageratum yellow vein China virus,
329288, >, Ageratum yellow vein China virus-associated DNA beta,
222079, >, Ageratum yellow vein Sri Lanka virus,
222441, >, Ageratum yellow vein Taiwan virus,
44560, >, Ageratum yellow vein virus,
185750, >, Ageratum yellow vein virus satellite DNA beta,
187850, >, Ageratum yellow vein virus-associated DNA 1,
176299, >, Agrobacterium tumefaciens str. C58 C58,
41763, >, Agropyron mosaic virus ND402,
10464, >, Agrotis segetum granulovirus,
31508, >, Agrotis segetum nucleopolyhedrovirus,
72149, >, Aichi virus,
35252, >, Alcelaphine herpesvirus 1 (wildebeest herpesvirus) C500,
28314, >, Aleutian mink disease virus,
28314, >, Aleutian mink disease virus ADV-G,
12321, >, Alfalfa mosaic virus,
12321, >, Alfalfa mosaic virus 425 Leiden,
44017, >, Alfuy virus MRM3929,
172148, >, Alkhurma hemorrhagic fever virus 1176,
316983, >, Alstroemeria virus x,
85454, >, Alternanthera mosaic virus (AltMV),
337826, >, Alternanthera yellow vein virus,
284689, >, Amasya cherry disease-associated mycovirus,
217733, >, Ambystoma tigrinum stebbensi virus (ATV),
265294, >, Ambystoma tigrinum virus Ambystoma tigrinum stebbensi virus,
134632, >, American plum line pattern virus,
188539, >, Amphotropic murine leukemia virus 1313,
240292, >, Anabaena variabilis ATCC 29413 (Anabaena flos-aquae UTEX 1444) ATCC 29413,
290397, >, Anaeromyxobacter dehalogenans 2CP-C 2CP-C,
234826, >, Anaplasma marginale str. St. Maries St. Maries,
212042, >, Anaplasma phagocytophilum HZ HZ,
46607, >, Andes virus Chile-9717869,
352882, >, Angelonia flower break virus,
161494, >, Antheraea pernyi nucleopolyhedrovirus (ApNPV) zhenjiang,
209529, >, Aphid lethal paralysis virus,
64280, >, Apoi virus ApMAR,
12175, >, Apple chlorotic leaf spot virus,
12175, >, Apple chlorotic leaf spot virus P863,
73494, >, Apple dimple fruit viroid,
190808, >, Apple fruit crinkle viroid,
101688, >, Apple latent spherical virus,
12319, >, Apple mosaic virus,
12895, >, Apple scar skin viroid,
28347, >, Apple stem grooving virus,
35350, >, Apple stem pitting virus ASPV,
307677, >, Apricot pseudo-chlorotic leaf spot virus,
56094, >, Aquareovirus A,
185782, >, Aquareovirus C Golden shiner reovirus,
224324, >, Aquifex aeolicus VF5 VF5,
12271, >, Arabis mosaic virus,
190809, >, Arabis mosaic virus large satellite RNA,
196399, >, Arabis mosaic virus small satellite RNA,
224325, >, Archaeoglobus fulgidus DSM 4304,
41952, >, Arctic ground squirrel hepatitis B virus,
12142, >, Artichoke mottled crinkle virus,
322098, >, Aster yellows witches'-broom phytoplasma AYWB,
85618, >, Ateline herpesvirus 3 73,
37961, >, Atkinsonella hypoxylon virus 2H,
348296, >, Atlantic salmon swim bladder sarcoma virus,
44158, >, Aura virus,
90961, >, Australian bat lyssavirus,
190810, >, Australian grapevine viroid (AGVd),
46015, >, Autographa californica nucleopolyhedrovirus,
219704, >, Avian adeno-associated virus ATCC VR-865 ATCC VR-865,
219704, >, Avian adeno-associated virus ATCC VR-865 VR 865,
281492, >, Avian adeno-associated virus strain DA-1 DA-1,
11958, >, Avian carcinoma virus,
70796, >, Avian encephalomyelitis virus,
70796, >, Avian encephalomyelitis virus Calnek,
70796, >, Avian encephalomyelitis virus van Reokel,
93465, >, Avian endogenous retrovirus EAV-HP,
172851, >, Avian hepatitis E virus,
284515, >, Avian infectious bronchitis virus partridge/GD/S14/2003 Partridge/GD/S14/2003,
363745, >, Avian leukosis virus - RSA,
11864, >, Avian leukosis virus Endogenous avian leukosis virus 1; ev-1,
11864, >, Avian leukosis virus Endogenous avian leukosis virus 3; ev-3,
11864, >, Avian leukosis virus NX0101,
38525, >, Avian metapneumovirus,
38525, >, Avian metapneumovirus Colorado,
11867, >, Avian myelocytomatosis virus,
157619, >, Avian paramyxovirus 6 (APMV-6),
157619, >, Avian paramyxovirus 6 (APMV-6) APMV-6/duck/Taiwan/Y1/98,
318490, >, Avirulent turkey hemorrhagic enteritis virus,
12896, >, Avocado sunblotch viroid,
76114, >, Azoarcus sp. EbN1 EbN1,
Abelson murine leukemia virusAbutilon mosaic virusAcanthamoeba polyphaga mimivirus
Acheta domestica densovirusAcholeplasma phage L2Acholeplasma phage MV-L1 JA-1
Acidianus filamentous virus 1Acidianus two-tailed virusAcinetobacter sp. ADP1 ADP1
Aconitum latent virusActinoplanes phage phiAsp2Acute bee paralysis virus
Acyrthosiphon pisum bacteriophage APSE-1Acyrthosiphon pisum virusAdeno-associated virus - 1
Adeno-associated virus - 2Adeno-associated virus - 3Adeno-associated virus - 3 3H
Adeno-associated virus - 4Adeno-associated virus - 5Adeno-associated virus - 7
Adeno-associated virus - 8Adeno-associated virus 3BAdeno-associated virus 6
Adeno-associated virus-Go.1Adoxophyes honmai NPV ADN001Adoxophyes orana granulovirus
Adult diarrheal rotavirus strain J19 J19Aedes albopictus densovirusAedes pseudoscutellaris reovirus
Aedes taeniorhynchus iridescent virusAeromonas phage 31Aeromonas phage 44RR2.8t
Aeromonas phage Aeh1 (Aeh1)Aeromonas salmonicida bacteriophage 25African cassava mosaic virus
African green monkey polyomavirusAfrican horsesickness virusAfrican horsesickness virus serotype 6
African horsesickness virus serotype 9African swine fever virusAfrican swine fever virus BA71V
Ageratum enation virusAgeratum leaf curl disease associated sequenceAgeratum leaf curl virus - [G52]
Ageratum yellow vein China virusAgeratum yellow vein China virus-associated DNA betaAgeratum yellow vein Sri Lanka virus
Ageratum yellow vein Taiwan virusAgeratum yellow vein virusAgeratum yellow vein virus satellite DNA beta
Ageratum yellow vein virus-associated DNA 1Agrobacterium tumefaciens str. C58 C58Agropyron mosaic virus ND402
Agrotis segetum granulovirusAgrotis segetum nucleopolyhedrovirusAichi virus
Alcelaphine herpesvirus 1 (wildebeest herpesvirus) C500Aleutian mink disease virusAleutian mink disease virus ADV-G
Alfalfa mosaic virusAlfalfa mosaic virus 425 LeidenAlfuy virus MRM3929
Alkhurma hemorrhagic fever virus 1176Alstroemeria virus xAlternanthera mosaic virus (AltMV)
Alternanthera yellow vein virusAmasya cherry disease-associated mycovirusAmbystoma tigrinum stebbensi virus (ATV)
Ambystoma tigrinum virus Ambystoma tigrinum stebbensi virusAmerican plum line pattern virusAmphotropic murine leukemia virus 1313
Anabaena variabilis ATCC 29413 (Anabaena flos-aquae UTEX 1444) ATCC 29413Anaeromyxobacter dehalogenans 2CP-C 2CP-CAnaplasma marginale str. St. Maries St. Maries
Anaplasma phagocytophilum HZ HZAndes virus Chile-9717869Angelonia flower break virus
Antheraea pernyi nucleopolyhedrovirus (ApNPV) zhenjiangAphid lethal paralysis virusApoi virus ApMAR
Apple chlorotic leaf spot virusApple chlorotic leaf spot virus P863Apple latent spherical virus
Apple mosaic virusApple scar skin viroidApple stem grooving virus
Apple stem pitting virus ASPVApricot pseudo-chlorotic leaf spot virusAquareovirus A
Aquareovirus C Golden shiner reovirusAquifex aeolicus VF5 VF5Arabis mosaic virus
Arabis mosaic virus large satellite RNAArabis mosaic virus small satellite RNAArchaeoglobus fulgidus DSM 4304
Arctic ground squirrel hepatitis B virusArtichoke mottled crinkle virusAster yellows witches'-broom phytoplasma AYWB
Ateline herpesvirus 3 73Atkinsonella hypoxylon virus 2HAtlantic salmon swim bladder sarcoma virus
Aura virusAustralian bat lyssavirusAustralian grapevine viroid (AGVd)
Autographa californica nucleopolyhedrovirusAvian adeno-associated virus ATCC VR-865 ATCC VR-865Avian adeno-associated virus ATCC VR-865 VR 865
Avian adeno-associated virus strain DA-1 DA-1Avian carcinoma virusAvian encephalomyelitis virus
Avian encephalomyelitis virus CalnekAvian encephalomyelitis virus van ReokelAvian endogenous retrovirus EAV-HP
Avian hepatitis E virusAvian infectious bronchitis virus partridge/GD/S14/2003 Partridge/GD/S14/2003Avian leukosis virus - RSA
Avian leukosis virus Endogenous avian leukosis virus 1; ev-1Avian leukosis virus Endogenous avian leukosis virus 3; ev-3Avian leukosis virus NX0101
Avian metapneumovirusAvian metapneumovirus ColoradoAvian myelocytomatosis virus
Avian paramyxovirus 6 (APMV-6)Avian paramyxovirus 6 (APMV-6) APMV-6/duck/Taiwan/Y1/98Avirulent turkey hemorrhagic enteritis virus
Avocado sunblotch viroidAzoarcus sp. EbN1 EbN1

Acknowledgement

Insignia is funded by the Homeland Security Advanced Research Projects Agency (HSARPA) at the Department of Homeland Security.